YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUOM_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.62
Transmembrane Helix	5	20	0.63
Cytoplasmic	21	29	0.77
Transmembrane Helix	30	49	0.93
Non-Cytoplasmic	50	80	0.89
Transmembrane Helix	81	104	0.91
Cytoplasmic	105	114	0.86
Transmembrane Helix	115	134	0.95
Non-Cytoplasmic	135	139	0.75
Transmembrane Helix	140	159	0.91
Cytoplasmic	160	174	0.88
Transmembrane Helix	175	197	0.92
Non-Cytoplasmic	198	220	0.86
Transmembrane Helix	221	238	0.93
Cytoplasmic	239	253	0.68
Transmembrane Helix	254	272	0.87
Non-Cytoplasmic	273	285	0.75
Transmembrane Helix	286	307	0.90
Cytoplasmic	308	313	0.94
Transmembrane Helix	314	334	0.92
Non-Cytoplasmic	335	340	0.78
Transmembrane Helix	341	363	0.89
Cytoplasmic	364	382	0.92
Transmembrane Helix	383	402	0.94
Non-Cytoplasmic	403	417	0.78
Transmembrane Helix	418	440	0.89
Cytoplasmic	441	461	0.87
Transmembrane Helix	462	481	0.92
Non-Cytoplasmic	482	509	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPWLILIP FIGGFLCWQT ERFGVKVPRW IALITMGLTL ALSLQLWLQG GYSLTQSAGI  60
   61 PQWQSEFDMP WIPRFGISIH LAIDGLSLLM VVLTGLLGVL AVLCSWKEIE KYQGFFHLNL 120
  121 MWILGGVIGV FLAIDMFLFF FFWEMMLVPM YFLIALWGHK ASDGKTRITA ATKFFIYTQA 180
  181 SGLVMLIAIL ALVFVHYNAT GVWTFNYEEL LNTPMSSGVE YLLMLGFFIA FAVKMPVVPL 240
  241 HGWLPDAHSQ APTAGSVDLA GILLKTAAYG LLRFSLPLFP NASAEFAPIA MWLGVIGIFY 300
  301 GAWMAFAQTD IKRLIAYTSV SHMGFVLIAI YTGSQLAYQG AVIQMIAHGL SAAGLFILCG 360
  361 QLYERIHTRD MRMMGGLWSK MKWLPALSLF FAVATLGMPG TGNFVGEFMI LFGSFQVVPV 420
  421 ITVISTFGLV FASVYSLAML HRAYFGKAKS QIASQELPGM SLRELFMILL LVVLLVLLGF 480
  481 YPQPILDTSH SAIGNIQQWF VNSVTTTRP