YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDHK_NOSS1
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNSDLTTQ DKERIINPIE RPTITQDLSE NVILTTVDDL YNWARLSSLW PLLFGTACCF  60
   61 IEFAALIGSR FDFDRFGLIP RSSPRQADLI ITAGTITMKM APQLVRLYEQ MPEPKYVIAM 120
  121 GACTITGGMF SVDSPTAVRG VDKLIPVDVY LPGCPPRPEA IIDAIIKLRK KIANDSMQER 180
  181 SLIRQTHRFY STTHNLKPVP DILTGKYMQS ETRFNPPKEL TEAIGLPVPP ALLTSQTQKE 240
  241 EQKRG

Type	Start	End	Confidence
Cytoplasmic	1	48	0.61
Transmembrane Helix	49	68	0.85
Non-Cytoplasmic	69	245	0.63