YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUC1_SYNRA
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIRRTSRA TASSSKSATS SILRQAILVF TGFLLGALFM VFVPSLYNAA EPSSLHRLMN  60
   61 PIRRNTLSAR ASSDILKLGN PGPVSDLLER SGYILSYNRR DRLAHWVGEH LTSASLQAGQ 120
  121 GVDRDKSNFQ EDTDIPEMFR AHLKDYVSSG YDRGHQAPAA DDLSSQEAMD ETFLLSNMAP 180
  181 QVGVGFNRHY WAYLEGFMRD LTQNFTDVYV YTGPLFLPSA ASTGRKNPAY SIEYPFLGAT 240
  241 TPNVPVPTHF FKIALTTTAS SEYALGAFVL PNQAIDSSTP LTNFKVELEA IEKAAGLVFF 300
  301 DKLDRSKFAD LCSKTTCQVR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.67
Transmembrane Helix	21	43	0.64
Non-Cytoplasmic	44	320	0.98