YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU6M_WHEAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLAPAFKF HFKGGRRTMI LSVLSSPALV SGLMVVRAKN PVHSVLFPIL VFCDTSGLLI  60
   61 LLGLDFSAMI SPVVHIGAIA VSFLFVVMMF NIQIAEIHEE VLRYLPVSGI IGLIFWWEMF 120
  121 FILDNETIPL LPTHRNTTSL RYTVYAGKVR SWTNLETLGN LLYTYYSVWF LVSSLILLVA 180
  181 MIGAIVLTMH RTTKVKRQDV FRRNALDSRS HIMNRTISPF GHSHRRSFSS GAGGPPDNYK 240
  241 ETFKMWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.46
Transmembrane Helix	18	36	0.84
Cytoplasmic	37	44	0.48
Transmembrane Helix	45	64	0.60
Non-Cytoplasmic	65	72	0.64
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	100	0.85
Transmembrane Helix	101	122	0.90
Non-Cytoplasmic	123	166	0.95
Transmembrane Helix	167	188	0.94
Cytoplasmic	189	247	0.98