YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU6M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFYLSFLMA ALVGGMIAIA SNPAPYFAAF GLVVVAGVGC GILVSYGGSF LSLILFLIYL  60
   61 GGMLVVFAYS AALAAEPFPE AWGDRVVFWR VMVYGLVVIV AAGFLLTGDT GLLMSVDAFK 120
  121 EFSVIRADVS GVAMMYSSGG KMLVICAWVL LLTLFVVLEV TRGLSYGVLR AI

Type	Start	End	Confidence
Cytoplasmic	1	10	0.50
Transmembrane Helix	11	45	0.72
Non-Cytoplasmic	46	52	0.43
Transmembrane Helix	53	73	0.91
Cytoplasmic	74	85	0.68
Transmembrane Helix	86	108	0.87
Non-Cytoplasmic	109	138	0.71
Transmembrane Helix	139	161	0.84
Cytoplasmic	162	172	0.65