YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|208612564, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.90
Non-Cytoplasmic	27	47	0.84
Transmembrane Helix	48	71	0.89
Cytoplasmic	72	81	0.89
Transmembrane Helix	82	101	0.94
Non-Cytoplasmic	102	107	0.70
Transmembrane Helix	108	129	0.82
Cytoplasmic	130	138	0.82
Transmembrane Helix	139	162	0.76
Non-Cytoplasmic	163	174	0.69
Transmembrane Helix	175	195	0.81
Cytoplasmic	196	208	0.60
Transmembrane Helix	209	229	0.84
Non-Cytoplasmic	230	238	0.61
Transmembrane Helix	239	261	0.88
Cytoplasmic	262	267	0.79
Transmembrane Helix	268	289	0.89
Non-Cytoplasmic	290	295	0.58
Transmembrane Helix	296	317	0.87
Cytoplasmic	318	334	0.70
Transmembrane Helix	335	356	0.88
Non-Cytoplasmic	357	375	0.73
Transmembrane Helix	376	396	0.85
Cytoplasmic	397	414	0.84
Transmembrane Helix	415	440	0.86
Non-Cytoplasmic	441	449	0.76
Transmembrane Helix	450	472	0.87
Cytoplasmic	473	481	0.64
Transmembrane Helix	482	507	0.78
Non-Cytoplasmic	508	551	0.83
Transmembrane Helix	552	571	0.95
Cytoplasmic	572	572	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSISFVNLI SMSLSCFLLS LYFLLNDMIY FIEWELVSLN SMSIVMTFLF DWMSLLFMSF  60
   61 VLMISSLVIF YSKEYMMNDN HINRFIMLVL MFVLSMMLLI ISPNLISILL GWDGLGLVSY 120
  121 CLVIYFQNIK SYNAGMLTAL SNRIGDVALL LSIAWMLNYG SWNYIFYLEI MQNEFEMLMI 180
  181 GSLVMLAAMT KSAQIPFSSW LPAAMAAPTP VSALVHSSTL VTAGVYLLIR FNIILSTSWL 240
  241 GQLMLLLSGL TMFMAGLGAN FEFDLKKIIA LSTLSQLGLM MSILSMGFLK LAMFHLLTHA 300
  301 LFKALLFMCA GAIIHNMNNS QDIRLMGGLS IHMPLTSACF NVSNLALCGM PFLAGFYSKD 360
  361 MILEIVSISN VNMFSFFLYY FSTGLTVSYS FRLVYYSMTG DLNCGSLNML NDESWIMLRG 420
  421 MMGLLIMSII GGSMLNWLIF PFPYMICLPI YMKLLTLFVC IVGGLFGYLI SLSNLFFLNK 480
  481 SLFMYNLSTF LGSMWFMPYI STYGMIFYPL NYGQLVVKSF DQGWSEYFGG QHLYQKLSMY 540
  541 SKTLFLMHNN SLKIYLLLFV FWILILLILL FL