YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU5M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.87
Transmembrane Helix	5	22	0.91
Cytoplasmic	23	33	0.87
Transmembrane Helix	34	56	0.87
Non-Cytoplasmic	57	83	0.94
Transmembrane Helix	84	107	0.85
Cytoplasmic	108	115	0.89
Transmembrane Helix	116	134	0.95
Non-Cytoplasmic	135	140	0.77
Transmembrane Helix	141	160	0.95
Cytoplasmic	161	171	0.91
Transmembrane Helix	172	192	0.89
Non-Cytoplasmic	193	242	0.71
Transmembrane Helix	243	264	0.90
Cytoplasmic	265	272	0.57
Transmembrane Helix	273	294	0.93
Non-Cytoplasmic	295	301	0.53
Transmembrane Helix	302	321	0.85
Cytoplasmic	322	329	0.44
Transmembrane Helix	330	351	0.81
Non-Cytoplasmic	352	370	0.64
Transmembrane Helix	371	392	0.78
Cytoplasmic	393	404	0.65
Transmembrane Helix	405	425	0.89
Non-Cytoplasmic	426	456	0.70
Transmembrane Helix	457	475	0.88
Cytoplasmic	476	483	0.72
Transmembrane Helix	484	507	0.87
Non-Cytoplasmic	508	517	0.76
Transmembrane Helix	518	537	0.94
Cytoplasmic	538	555	0.80
Transmembrane Helix	556	576	0.90
Non-Cytoplasmic	577	582	0.71
Transmembrane Helix	583	602	0.90
Cytoplasmic	603	606	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDMIMPLTL ILIFAVLSYP LLKPKSYSKS NNSFQAWNAV HVSFLISLIP LTMMLYKESD  60
   61 HVVMCWSWMN TQAFNVDLSF KFDYYSVTFT SIALFITWSI LEFASWYMAS YPQKELFYKY 120
  121 LLLFLMSMII LVTANNLFQL FIGWEGVGIM SFLLIGWWFG RTEANTASLQ AVIYNRMGDI 180
  181 GFILTLAWMA MYLNSWDIQQ IFILSKDFDM TIPQIGLIIA ATGKSAQFTL HPWLPSAMEG 240
  241 PTPVSALLHS STMVVAGIFL LIRLHPIMET NKLAPTICLC LGALTTLFAA TCALTQNDIK 300
  301 KIVAFSTSSQ LGLMMVAIGL NQPHLAFFHI CTHAFFKAML FLCSGAIIHS LNNEQDIRKM 360
  361 GGTYHTLPMT TNYLTIGKMA LMGTPFLAGF FSKDAILEAM TTSHLNAWAL TLTLIATSFT 420
  421 AVYSFRMIYL VCLGSPRHKT YETIDENHIP TNTIQRLAWG SIIAGLIISY TMIPLKTPIL 480
  481 TMPIYLKLAA ILVTLLGIIL GLEISTLANK INKNTTPGIP FHFSISLIFF PILHRLIPMR 540
  541 KLFMGESAAT KIEKSWSELF GPCGIAFTLM TVATFVKDHR MASIKSYLAV FLTSIILKMM 600
  601 MLKLYT