YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU4M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	61	0.85
Transmembrane Helix	62	81	0.91
Cytoplasmic	82	94	0.82
Transmembrane Helix	95	113	0.93
Non-Cytoplasmic	114	118	0.68
Transmembrane Helix	119	138	0.93
Cytoplasmic	139	148	0.84
Transmembrane Helix	149	168	0.97
Non-Cytoplasmic	169	194	0.87
Transmembrane Helix	195	211	0.97
Cytoplasmic	212	223	0.66
Transmembrane Helix	224	242	0.91
Non-Cytoplasmic	243	257	0.81
Transmembrane Helix	258	278	0.95
Cytoplasmic	279	285	0.89
Transmembrane Helix	286	304	0.97
Non-Cytoplasmic	305	311	0.69
Transmembrane Helix	312	333	0.91
Cytoplasmic	334	347	0.81
Transmembrane Helix	348	370	0.81
Non-Cytoplasmic	371	390	0.85
Transmembrane Helix	391	413	0.89
Cytoplasmic	414	434	0.92
Transmembrane Helix	435	455	0.78
Non-Cytoplasmic	456	460	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKVLIPTIM LFPTIWLSSS KWLWTTTTMN SFLIAFISLT WLKWTSDTGW NASNSYMAAD  60
   61 PLSTPLLVLT CWLLPLMILA SQNHINSEPV NRQRMYITLL ASLQTFMIMA FGATKIIMFY 120
  121 IMFEATLIPT LIIITRWGNQ AERLNAGTYF LFYTLAGSLP LLVALLLLQQ STGTLSMLVL 180
  181 QYSDPLLLNS WGHKIWWAGC LIAFLVKMPL YGMHLWLPKA HVEAPVAGSM ILAAVLLKLG 240
  241 GYGMMRMMVM LDPLSKQLAY PFIILALWGV IMTGLVCLRQ TDLKSLIAYS SVGHMGLVAG 300
  301 GILIQTPWGF TGAIILMIAH GLTSSALFCL ANTSYERTHS RTMILARGLQ MVLPLATVWW 360
  361 FIANLANLAL PPLPNLMGEL MIITALFNWS PWTIIITGMG TLITANYSLY MFLTSQRGSI 420
  421 PEHITNLSPS HTREHLLMTL HLIPIILLML KPELMWGWCN