YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU3M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFATILII MTTLSLVLAL VSFWLPQMNS DTEKLSPYEC GFDPLGSARL PFSLRFFLVA  60
   61 VLFPLFDLEI ALLLPLPWGD QLNNPMETLF WAMTVLILLT LGLAYEWAQG GLEWAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.55
Transmembrane Helix	5	26	0.90
Cytoplasmic	27	53	0.54
Transmembrane Helix	54	76	0.86
Non-Cytoplasmic	77	87	0.52
Transmembrane Helix	88	108	0.92
Cytoplasmic	109	116	0.53