YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU2M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.60
Transmembrane Helix	7	40	0.65
Cytoplasmic	41	58	0.65
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	88	0.69
Transmembrane Helix	89	109	0.83
Cytoplasmic	110	120	0.52
Transmembrane Helix	121	143	0.66
Non-Cytoplasmic	144	150	0.77
Transmembrane Helix	151	170	0.92
Cytoplasmic	171	177	0.86
Transmembrane Helix	178	197	0.88
Non-Cytoplasmic	198	202	0.68
Transmembrane Helix	203	223	0.87
Cytoplasmic	224	238	0.75
Transmembrane Helix	239	259	0.91
Non-Cytoplasmic	260	274	0.84
Transmembrane Helix	275	297	0.87
Cytoplasmic	298	323	0.83
Transmembrane Helix	324	345	0.86
Non-Cytoplasmic	346	348	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPYVLMILM SSLGLGTTLT FSSSHWILAW MGLEINTLAI VPLMAQQHHP RAVEATTKYF  60
   61 LIQAAAAAMI LFTSTTNAWI SGQWDVTGMP GPATSTAMMF ALALKIGLAP MHFWLPEVLQ 120
  121 GLDLLTGLIL STWQKLAPMA LIIQTTQTTD PLILTSLGIA SSLIGGWSGL NQTQLRKILA 180
  181 YSSIAHMGWM IIVIQYAPQL TLIALGTYIF MTSAAFLTLK VLSATKINTL TTTWPKSPIL 240
  241 AAIATLVMLS LGGLPPLTGF MPKWLILQEL TKQDLPATAT IMALTALLSL FFYLRLCHAM 300
  301 TLTTSPNTIN SAPHWRVQTT QNSLPLTISV TVTMGLLPLT PAILMLTT