YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50657562, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTLMTHLI NPLAYIVPVL LAVAFLTLIE RKVLGYMQLR KGPNVVGPYG LLQPIADGVK  60
   61 LFIKEPVRPS TSSPFLFLAA PVLALTLAMT LWAPMPMPHP VTDLNLGILF ILALSSLAVY 120
  121 SILGSGWASN SKYALIGALR AVAQTISYEV SLGLILLSVI IFSGGYTLQT FNTTQESIWL 180
  181 LIPAWPLAAM WYISTLAETN RAPFDLTEGE SELVSGFNVE YAGGPFALFF LAEYANILLM 240
  241 NTLSAVLFLG ASHIPNMPEL TTINLMTKAA LLSILFLWVR ASYPRFRYDQ LMHLVWKNFL 300
  301 PLTLAFVLWH TALPIALAGL PPQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	29	0.88
Cytoplasmic	30	73	0.88
Transmembrane Helix	74	93	0.95
Non-Cytoplasmic	94	105	0.80
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	144	0.88
Transmembrane Helix	145	168	0.86
Non-Cytoplasmic	169	176	0.83
Transmembrane Helix	177	196	0.89
Cytoplasmic	197	233	0.80
Transmembrane Helix	234	254	0.76
Non-Cytoplasmic	255	259	0.84
Transmembrane Helix	260	281	0.86
Cytoplasmic	282	298	0.78
Transmembrane Helix	299	318	0.91
Non-Cytoplasmic	319	324	0.79