YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU1M_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILTSHLI NPLAYAVPVL IAVAFLTLVE RKVLGYMQLR KGPNVMGPRG LLQSVADGVK  60
   61 LFIKEPIRPS MASPILFLTA PVLALILAMM LWAPMPMPYP VLDLNLGILF IMAISSLAVY 120
  121 SILGSGWASN SKYALIGALR AVAQTISYEV SLGLILLSAV IFSGGYTLQT FNTTQEDTWL 180
  181 LLPLWPLAIM WFISTLAETN RAPFDLTEGE SELVSGFNVE YAAGPFALFF LAEYSNILLM 240
  241 NTHSTVLFLG ASFTPDAPEL MTISIATKTA MLSILFLWMR ASYPRFRYDQ LMHLIWKNFL 300
  301 PITLVLVLWH IALPIALAGL PPQT

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.76
Transmembrane Helix	12	29	0.92
Cytoplasmic	30	71	0.93
Transmembrane Helix	72	93	0.91
Non-Cytoplasmic	94	105	0.81
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	144	0.88
Transmembrane Helix	145	168	0.85
Non-Cytoplasmic	169	178	0.86
Transmembrane Helix	179	197	0.91
Cytoplasmic	198	216	0.84
Transmembrane Helix	217	238	0.75
Non-Cytoplasmic	239	259	0.78
Transmembrane Helix	260	279	0.94
Cytoplasmic	280	298	0.81
Transmembrane Helix	299	318	0.92
Non-Cytoplasmic	319	324	0.83