YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRFD_HAEIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDYPVPFH TPNLVWDYTI AIYLFLLGIS SGAVQLAIAY KRSNKLENLS QNWIIRSGVI  60
   61 LGSVPTLIGL TLLIFHLTRP WTFWKLMFNY QFNSVMSMGV MLFQIYMLFL VIWGVVIFKK 120
  121 EIEALINRFI PKLQFVMKLI GIAERIVSPV EVILFILAAV LGAYTGFLLS ALISYPMLNN 180
  181 PVLPALFLAS GTSSGIAATF LIILIAGKLK GDSHESHFIH KFEVPIMVTE LGLIVCFFVG 240
  241 LHFGGGQKTV ALHNALSGFW GVVFWVGVLI IGILIPLIAN MFVNDRLKYN RNFIILVSIF 300
  301 DLIGVFCLRF FILYAGQLTV A

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.94
Transmembrane Helix	19	39	0.95
Cytoplasmic	40	52	0.94
Transmembrane Helix	53	77	0.87
Non-Cytoplasmic	78	94	0.93
Transmembrane Helix	95	118	0.89
Cytoplasmic	119	151	0.91
Transmembrane Helix	152	173	0.89
Non-Cytoplasmic	174	184	0.78
Transmembrane Helix	185	206	0.95
Cytoplasmic	207	223	0.90
Transmembrane Helix	224	245	0.90
Non-Cytoplasmic	246	260	0.84
Transmembrane Helix	261	283	0.90
Cytoplasmic	284	292	0.90
Transmembrane Helix	293	313	0.96
Non-Cytoplasmic	314	321	0.83