YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRFD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTSAFHFE SLVWDWPIAI YLFLIGISAG LVTLAVLLRR FYPQAGGADS TLLRTTLIVG  60
   61 PGAVILGLLI LVFHLTRPWT FWKLMFHYSF TSVMSMGVML FQLYMVVLVL WLAKIFEHDL 120
  121 LALQQRWLPK LGIVQKVLSL LTPVHRGLET LMLVLAVLLG AYTGFLLSAL KSYPFLNNPI 180
  181 LPVLFLFSGI SSGAAVALIA MAIRQRSNPH STEAQFVHRM EIPVVWGEIF LLVAFFVGLA 240
  241 LGDDGKVRAL VAALGGGFWT WWFWLGVAGL GLIVPMLLKP WVNRSSGIPA VLAACGASLV 300
  301 GVLMLRFFIL YAGQLTVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	38	0.96
Cytoplasmic	39	51	0.87
Transmembrane Helix	52	75	0.89
Non-Cytoplasmic	76	89	0.83
Transmembrane Helix	90	113	0.84
Cytoplasmic	114	149	0.92
Transmembrane Helix	150	170	0.90
Non-Cytoplasmic	171	179	0.84
Transmembrane Helix	180	203	0.91
Cytoplasmic	204	221	0.95
Transmembrane Helix	222	242	0.93
Non-Cytoplasmic	243	257	0.89
Transmembrane Helix	258	278	0.90
Cytoplasmic	279	287	0.78
Transmembrane Helix	288	310	0.92
Non-Cytoplasmic	311	318	0.88