YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPC1_PIG
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	268	0.99
Transmembrane Helix	269	291	0.93
Cytoplasmic	292	344	0.97
Transmembrane Helix	345	371	0.80
Non-Cytoplasmic	372	621	0.99
Transmembrane Helix	622	642	0.93
Cytoplasmic	643	653	0.88
Transmembrane Helix	654	678	0.89
Non-Cytoplasmic	679	683	0.80
Transmembrane Helix	684	706	0.90
Cytoplasmic	707	734	0.85
Transmembrane Helix	735	754	0.80
Non-Cytoplasmic	755	761	0.57
Transmembrane Helix	762	785	0.82
Cytoplasmic	786	835	0.85
Transmembrane Helix	836	853	0.78
Non-Cytoplasmic	854	1096	0.68
Transmembrane Helix	1097	1116	0.89
Cytoplasmic	1117	1123	0.63
Transmembrane Helix	1124	1146	0.87
Non-Cytoplasmic	1147	1151	0.72
Transmembrane Helix	1152	1173	0.82
Cytoplasmic	1174	1190	0.81
Transmembrane Helix	1191	1215	0.82
Non-Cytoplasmic	1216	1226	0.73
Transmembrane Helix	1227	1250	0.88
Cytoplasmic	1251	1277	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARGPAFGL LLLLLCPVQV FSQSCVWYGE CGIASGDKRY NCRYSGPPKP LPEDGYDLVQ  60
   61 ELCPGFFFGN VSLCCDVQQL RTLKDNLQLP LQFLSRCPSC FYNLMNLFCE LTCSPRQSQF 120
  121 LNVTATEDYV DPVTNQTKTN VKELEYYVGE TFANAMYNAC RDVEAPSSNE KALGLLCGRE 180
  181 AQACNATNWI EYMFNKDNGQ APFTITPIFS DLPTHGMEPM NNATKGCDES VDEVTGPCSC 240
  241 QDCSIVCGPK PQPPPPPVPW RILGLDAMYV IMWSSYMAFL IVFFGAFFAV WCYRKRYFVS 300
  301 EYTPIDGNIA FSVNSSDKGQ AFCCDPLGAA FERGLRRLFA QWGAFCVRHP GCVVFFSLAF 360
  361 IVACSSGLVF IRVTTDPVDL WSAPGSQARR EKEYFDTHFG PFFRMEQLII RATNNQSHIY 420
  421 HPYPAGADVP FGPPLSRDIL HQVLDLQTAI ENITASYNNE TVTLQDICLA PLSPYNKNCT 480
  481 ILSVLNYFQN SHSVLDHQVG DFFFVYADYH THFLYCVRAP ASLNDASLLH DPCLGTFGGP 540
  541 VFPWLVLGGY DDQNYNNATA LVITFPVNNY YNDTEKLQRA QAWESEFINF VKNYKNPNLT 600
  601 ISFMAERSIE DELNRESNSD LFTILISYAI MFLYISIALG HIKSCSRLLV DSKISLGIAG 660
  661 ILIVLSSVAC SLGIFSYIGV PLTLIVIEVI PFLVLAVGVD NIFILVQTYQ RDERLQGETL 720
  721 DQQLGRVLGE VAPSMFLSSF SETVAFFLGG LSVVPAVHTF SLFAGMAVLI DFLLQITCFV 780
  781 SLLGLDIKRQ EKNRLDVVCC VQGAEDGAGV QASESCLFRF FKNSYAPLLL KDWMRPIVIA 840
  841 VFVGVLSFSI AVLNKVEIGL DQSLSMPDDS YVMDYFQSLS RYLHAGPPVY FVVEEGHNYT 900
  901 SLKGQNMVCG GLGCNNDSLV QQIFTAAQLD NYTRIGFAPS SWIDDYFDWI KPQSSCCRVY 960
  961 NSTDQFCNAS VVDPTCIRCR PLTSEGKQRP QGEDFMRFLP MFLSDNPNPK CGKGGHAAYS1020
 1021 SAVNILGNGS GVGATYFMTY HTVLQASADF IDAMQKARLI ASNITRTMGL EASSYRVFPY1080
 1081 SVFYVFYEQY LTVIDDTIFN LGVSLGAIFL VTVVLMGCEL WATVIMCVTI AMILVNMFGV1140
 1141 MWLWGISLNA VSLVNLVMSC GISVEFCSHI TRAFTLSTKG SRVDRAEEAL AHMGSSVFSG1200
 1201 ITLTKFGGIV VLAFAKSQIF QIFYFRMYLA IVLLGATHGL IFLPVLLSYI GPSINKAKSL1260
 1261 ATQERYKGTE REQLLNF