YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOP1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHPEQVADM LRPTTSTTSS HVPGPVPTVV PTPTEYQTLG ETGHRTLWVT FALMVLSSGI  60
   61 FALLSWNVPT SKRLFHVITT LITVVASLSY FAMATGHATT FNCDTAWDHH KHVPDTSHQV 120
  121 CRQVFWGRYV DWALTTPLLL LELCLLAGVD GAHTLMAIVA DVIMVLCGLF AALGEGGNTA 180
  181 QKWGWYTIGC FSYLFVIWHV ALHGSRTVTA KGRGVSRLFT GLAVFALLLW TAYPIIWGIA 240
  241 GGARRTNVDT EILIYTVLDL LAKPVFGFWL LLSHRAMPET NIDLPGYWSH GLATEGRIRI 300
  301 GEED

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.78
Transmembrane Helix	46	66	0.93
Cytoplasmic	67	73	0.69
Transmembrane Helix	74	97	0.85
Non-Cytoplasmic	98	128	0.79
Transmembrane Helix	129	149	0.71
Cytoplasmic	150	154	0.63
Transmembrane Helix	155	174	0.92
Non-Cytoplasmic	175	182	0.72
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	217	0.72
Transmembrane Helix	218	237	0.93
Non-Cytoplasmic	238	251	0.73
Transmembrane Helix	252	272	0.83
Cytoplasmic	273	304	0.83