YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOGG1_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFPRFLLSA YLLLLSFAQC QHYYLLRPIP SDTLPLLELK EDPDPIYDPR EKDLNETELR  60
   61 SALGDFDSRF LSVGPPQDRY AGNEDLDEQE LQLNLAGMMP KDIKNLDFDA PWGKKRKASK 120
  121 KLKRRLQMWL WSYSFCPVLY AWNDLGSRFW PRFVRAGSCY TKRSCSVPEG MVCKPAKSTH 180
  181 ITLLRWRCVA RRGALKCAWI PVQYPIITEC KCSCAN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	216	0.99