YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NODC_RHILO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFASASTV AICSYALLST VYKTAQVFYT LPTNVPPTSG DPPSGEPWPS VDVIIPCYNE  60
   61 APRTLSDCLA SIASQDYAGK LQVYVVDDGS ANRDALVGVH EEYAGDPRFN FVALPKNVGK 120
  121 RKAQIAAIRR SCGDLVLNVD SDTILAPDVI TRLALKMQDQ AVGAAMGQLA ASNRSETWLT 180
  181 RLIDMEYWLA CNEERAAQAR FGAVMCCCGP CAMYRRSALV SLLDQYETQR FRGKPSDFGE 240
  241 DRHLTILMLK AGFRTEYVPE AVAATVVPNS MGPYLRQQLR WARSTFRDTL LAFQLLRGLN 300
  301 IYLTLDVIGQ NIGPLLLSLS ILAGLAQFVT TGTVPWTACL MIAAMTIVRC SVAAFRARQL 360
  361 RFLGFSLHTL INIFLLLPLK AYALCTLSNS DWLSRSSAAN VQDTGDALPK PNLVGSDAAY 420
  421 SEQQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.65
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	322	0.70
Transmembrane Helix	323	352	0.74
Cytoplasmic	353	361	0.82
Transmembrane Helix	362	384	0.84
Non-Cytoplasmic	385	424	0.89