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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCKX1_BOVIN
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLIRMGAQ ERRSLWPKRL HWSRPLFLLG MLIIGSTYQY LTSPQGLPTL WAAVSSQHPV  60
   61 KVASRDLSNK EMMMVSSETS KSSSEMEVEA WAPEATAGRD GTPPGIARKN TPSTPRGTAS 120
  121 ITPAIPNNYS PTPTGTGKVK EDTSATPSGV LNHYTQSRPM VNSYTRLTAR GEVKSSRPTQ 180
  181 SRGKEEKYSP SPLGRMVNSY APSTLMTMPR SHGITPRTTV KDREIMATKK MLATNPSKRL 240
  241 VEKTTPTPLK GITDNTPTFL LSDLETDTLT SPRNVVEKKT LTTPRRVDSN SSTNHQGLVG 300
  301 KNNLTTPQGM VLEHTAAVSE GQVTISTMTR SSPTETKAST DAWKVRNPLP RTSAPIIRIS 360
  361 SATFRGLLKN PSKAPSTPAA PRVRANPTIQ VRHCLVVEPA PVAPTAPSPS WTTAVIPGIP 420
  421 SPSGQPDLYP KAEYPRDLFS VEERRQGWVV LHIFGMMYVF VALAIVCDEY FVPALGVITD 480
  481 KLQISEDVAG ATFMAAGGSA PELFTSLIGV FISHSNVGIG TIVGSAVFNI LFVIGTCALF 540
  541 SREILNLTWW PLFRDITFYI FDLMMLILFF LDSLIAWWES VLLLLAYAFY VFTMKWNQQL 600
  601 ELWVKEQLNK RPVAKVMALG DLSKPGDGTV VVDEQQDNKK LKLSSMLTRG SSSASLHNST 660
  661 IRSTIYQLML HSLDPLGEAR PSKDKEEETL IPEAKATPQA KAESKPEEEP AKLPEVTVTP 720
  721 APAPDVKGDQ EEDPGSQGVG AEAENTGERT GGEAEAPAEG ENGERSGGDA ALGGESEGKA 780
  781 ENESEGDIPA ERRGDDEDEG EIQAEGGEVK GDEDEGEIQA GEGGEVEGDE DEGEIQAGEG 840
  841 GEVEGDEDEG EIQAGEAGEV EGDEDEGEIQ AGEGGEVEGD EDEGEIQAGE AGEVEGDEDE 900
  901 GEIQAGEGGE VKGDEGEIQA GEAGEVEGED GEVEGGEDEG EIQAGEGGEG ETGEQELNAE 960
  961 IQGEAKDDEE GVDGEGGGDG GDSEDEEEED EEEEDEEEEE EEEEEEEEEN EQPLSLEWPE1020
 1021 TRRKQAIYLF LLPIVFPLWL TVPDVRRLEA KKFFVITFLG SILWIAMFSY LMVWWAHQVG1080
 1081 ETIGISEEIM GLTILAAGTS IPDLITSVIV ARKGLGDMAV SSSVGSNIFD ITVGLPLPWM1140
 1141 LFSLINGLQP VAVSSNGLFC AIVLLFLMLL FVISSIALCK WRMNKILGFT MFLLYFVFLI1200
 1201 ISVMLEDRII SCPVSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle