YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NKG2D_RAT
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKCHNYDLK PAKWDTSQEH QKQRSALPTS RPGENGIIRR RSSIEELKIS PLFVVRVLVA  60
   61 AMTIRFTVIT LTWLAVFITL LCNKEVSVSS REGYCGPCPN DWICHRNNCY QFFNENKAWN 120
  121 QSQASCLSQN SSLLKIYSKE EQDFLKLVKS YHWMGLVQSP ANGSWQWEDG SSLSPNELTL 180
  181 VKTPSGTCAV YGSSFKAYTE DCSNPNTYIC MKRAV

Type	Start	End	Confidence
Cytoplasmic	1	56	0.75
Transmembrane Helix	57	81	0.73
Non-Cytoplasmic	82	215	0.89