YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIKC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFFLSSRWS VRLALIIIAL LALIALTSQW WLPYDPQAID LPSRLLSPDA QHWLGTDHLG  60
   61 RDIFSRLMAA TRVSLGSVMA CLLLVLTLGL VIGGSAGLIG GRVDQATMRV ADMFMTFPTS 120
  121 ILSFFMVGVL GTGLTNVIIA IALSHWAWYA RMVRSLVISL RQREFVLASR LSGAGHVRVF 180
  181 VDHLAGAVIP SLLVLATLDI GHMMLHVAGM SFLGLGVTAP TAEWGVMIND ARQYIWTQPL 240
  241 QMFWPGLALF ISVMAFNLVG DALRDHLDPH LVTEHAH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	32	0.86
Non-Cytoplasmic	33	74	0.82
Transmembrane Helix	75	100	0.86
Cytoplasmic	101	119	0.63
Transmembrane Helix	120	146	0.84
Non-Cytoplasmic	147	178	0.53
Transmembrane Helix	179	198	0.83
Cytoplasmic	199	203	0.37
Transmembrane Helix	204	227	0.79
Non-Cytoplasmic	228	239	0.51
Transmembrane Helix	240	260	0.89
Cytoplasmic	261	277	0.51