YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NINJ2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDREIIHL QHRHSTPGGN QRHINLNHYA TKKSVAESML DVALFMSNAM RLKSVLEQGP  60
   61 FSQYYTTLLT LISASLLLQV VIGILLVVIA RLNLNEVENQ WRLNQLNNAA TTLVFITVVI 120
  121 NIFITAFGAH KTGSVAARTS SNPI

Type	Start	End	Confidence
Cytoplasmic	1	66	0.62
Transmembrane Helix	67	90	0.89
Non-Cytoplasmic	91	108	0.55
Transmembrane Helix	109	130	0.91
Cytoplasmic	131	144	0.58