YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.67
Transmembrane Helix	20	44	0.89
Non-Cytoplasmic	45	57	0.48
Transmembrane Helix	58	80	0.78
Cytoplasmic	81	89	0.52
Transmembrane Helix	90	114	0.79
Non-Cytoplasmic	115	129	0.52
Transmembrane Helix	130	164	0.79
Cytoplasmic	165	200	0.89
Transmembrane Helix	201	220	0.90
Non-Cytoplasmic	221	237	0.89
Transmembrane Helix	238	260	0.89
Cytoplasmic	261	297	0.95
Transmembrane Helix	298	332	0.77
Non-Cytoplasmic	333	350	0.42
Transmembrane Helix	351	373	0.85
Cytoplasmic	374	388	0.40
Transmembrane Helix	389	413	0.62
Non-Cytoplasmic	414	450	0.69
Transmembrane Helix	451	471	0.84
Cytoplasmic	472	478	0.77
Transmembrane Helix	479	500	0.91
Non-Cytoplasmic	501	513	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISWGRALW RNFLGQSPDW YKLALIIFLI VNPLIFLISP FVAGWLLVAE FIFTLAMALK  60
   61 CYPLLPGGLL AIEAVFIGMT SAEHVREEVA ANLEVLLLLM FMVAGIYFMK QLLLFIFTRL 120
  121 LLSIRSKMLL SLSFCVAAAF LSAFLDALTV VAVVISVAVG FYGIYHRVAS SRTEDTDLQD 180
  181 DSHIDKHYKV VLEQFRGFLR SLMMHAGVGT ALGGVMTMVG EPQNLIIAKA AGWHFGDFFL 240
  241 RMSPVTVPVL ICGLLTCLLV EKLRWFGYGE TLPEKVREVL QQFDDQSRHQ RTRQDKIRLI 300
  301 VQAIIGVWLV TALALHLAEV GLIGLSVIIL ATSLTGVTDE HAIGKAFTES LPFTALLTVF 360
  361 FSVVAVIIDQ QLFSPIIQFV LQASEHAQLS LFYIFNGLLS SISDNVFVGT IYINEAKAAM 420
  421 ESGAITLKQY ELLAVAINTG TNLPSVATPN GQAAFLFLLT SALAPLIRLS YGRMVWMALP 480
  481 YTLVLTLVGL LCVEFTLAPV TEWFMQMGWI ATL