YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NFASC_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.69
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQQAPPWV HVALILFLLS LGGAIEIPMD PSIQNELTQP PTITKQSVKD HIVDPRDNIL  60
   61 IECEAKGNPA PSFHWTRNSR FFNIAKDPRV SMRRRSGTLV IDFRSGGRPE EYEGEYQCFA 120
  121 RNKFGTALSN RIRLQVSKSP LWPKENLDPV VVQEGAPLTL QCNPPPGLPS PVIFWMSSSM 180
  181 EPITQDKRVS QGHNGDLYFS NVMLQDMQTD YSCNARFHFT HTIQQKNPFT LKVLTTRGVA 240
  241 ERTPSFMYPQ GTSSSQMVLR GMDLLLECIA SGVPTPDIAW YKKGGDLPSD KAKFENFNKA 300
  301 LRITNVSEED SGEYFCLASN KMGSIRHTIS VRVKAAPYWL DEPKNLILAP GEDGRLVCRA 360
  361 NGNPKPTVQW LVNGDPLQSA PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN 420
  421 AFVSVLDVPP RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV 480
  481 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED QVAKRGTTVQ 540
  541 LECRVKHDPS LKLTVSWLKD DEPLYIGNRM KKEDDSLTIF GVAERDQGSY TCMASTELDQ 600
  601 DLAKAYLTVL ADQATPTNRL AALPKGRPDR PRDLELTDLA ERSVRLTWIP GDDNNSPITD 660
  661 YVVQFEEDQF QPGVWHDHSK FPGSVNSAVL HLSPYVNYQF RVIAVNEVGS SHPSLPSERY 720
  721 RTSGAPPESN PSDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETRETWNNVT 780
  781 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPETVIGYS GEDLPSAPRR FRVRQPNLET 840
  841 INLEWDHPEH PNGILIGYTL RYVPFNGTKL GKQMVENFSP NQTKFSVQRA DPVSRYRFSL 900
  901 SARTQVGSGE AATEESPTPP NEATPTAAPP TLPPTTVGTT GLVSSTDATA LAATSEATTV 960
  961 PIIPTVVPTT VATTIATTTT TTAAATTTTT TESPPTTTTG TKIHETAPDE QSIWNVTVLP1020
 1021 NSKWANITWK HNFRPGTDFV VEYIDSNHTK KTVPVKAQAQ PIQLTDLFPG MTYTLRVYSR1080
 1081 DNEGISSTVI TFMTSTAYTN NQTDIATQGW FIGLMCAIAL LVLILLIVCF IKRSRGGKYP1140
 1141 VREKKDVPLG PEDPKEEDGS FDYSDEDNKP LQGSQTSLDG TIKQQESDDS LVDYGEGGEG1200
 1201 QFNEDGSFIG QYTVRKDKEE TEGNESSEAT SPVNAIYSLA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle