YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NEC1_NICPL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFGIKSKI FQIMEMTILF LFAISIDRYC FAADEDMLQD VCVADLHSKV KVNGFPCKTN  60
   61 FTAADFSSFA ISKPGATNNK FGSKVTTANV EQVPGLNTLG VSLARIDYAP GGINPPHTHP 120
  121 RASEMVFVME GELDVGFITT ANVLVSKQIT KGEVFVFPRG LVHFQKNNGK IPAAVVSAFN 180
  181 SQLPGTQSIP ITLFGASPTV PDDVLAQTFQ INIEDVQQIK SKFAPAKKF

Type	Start	End	Confidence
Signal Peptide	1	32	0.72
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	229	0.99