YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	47	0.93
Transmembrane Helix	48	67	0.88
Cytoplasmic	68	78	0.70
Transmembrane Helix	79	97	0.95
Non-Cytoplasmic	98	106	0.71
Transmembrane Helix	107	125	0.76
Cytoplasmic	126	135	0.54
Transmembrane Helix	136	159	0.87
Non-Cytoplasmic	160	172	0.64
Transmembrane Helix	173	195	0.81
Cytoplasmic	196	203	0.58
Transmembrane Helix	204	223	0.59
Non-Cytoplasmic	224	245	0.78
Transmembrane Helix	246	269	0.91
Cytoplasmic	270	276	0.74
Transmembrane Helix	277	296	0.71
Non-Cytoplasmic	297	298	0.48
Transmembrane Helix	299	318	0.66
Cytoplasmic	319	331	0.66
Transmembrane Helix	332	354	0.75
Non-Cytoplasmic	355	363	0.56
Transmembrane Helix	364	388	0.83
Cytoplasmic	389	401	0.66
Transmembrane Helix	402	421	0.85
Non-Cytoplasmic	422	430	0.52
Transmembrane Helix	431	451	0.93
Cytoplasmic	452	898	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVALLLLP GLPLAGVGAT EEPTQEPGPL GEPPGLALFR WQWHEVEAPY LVALWILVAS  60
   61 LAKIVFHLSR KVTSLVPESC LLILLGLALG GIVLAVAKKA EYQLEPGTFF LFLLPPIVLD 120
  121 SGYFMPSRLF FDNLGAILTY AVVGTLWNAF TTGVALWGLQ QAGLVAPRVQ AGLLDFLLFG 180
  181 SLISAVDPVA VLAVFEEVHV NETLFIIVFG ESLLNDAVTA VLYKVCNSFV EMGSANVQAT 240
  241 DYLKGVASLF VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS 300
  301 LSAILAVTMC GLGCKKYVEA NISHKSRTAV KYTMKTLASS AETVIFMLLG ISAVDSSKWA 360
  361 WDSGLVLGTL FFILFFRALG VVLQTWVLNQ FRLAPLDKID QVVMSYGGLR GAVAFALVIL 420
  421 LDRTKVPAKD YFVATTIVVV FFTVIVQGLT IKPLVKWLRV KRSDYHKPTL NQELHEHTFD 480
  481 HILAAVEDVV GHHGYHYWRD RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS 540
  541 FVDQGGHVLS SAGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA 600
  601 VMHHLLCGGL YKPRRRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF KSTKHNICFT 660
  661 KSKPRPRKTG HKKKDGVANP EATNGKPPRD LGFQDTAAVI LTVESEEEEE SESSETEKED 720
  721 DEGIIFVARA TSEVLQEGKV SGSLEVCPSP RIIPPSPTCA EKELPWKSGQ GDLAVYVSSE 780
  781 TTKIVPVDMQ TGWNQSISSL ESLASPPCTQ PPTLTRLPPH PLVPEEPQVP LDLSSDPRSS 840
  841 FAFPPSLAKA GRSRSESSAD IPQQQELQPL MGHKDHTHLS PGPANSHWCI QFNRGGRL