YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAH2_ZYGRO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.51
Transmembrane Helix	11	32	0.90
Cytoplasmic	33	36	0.51
Transmembrane Helix	37	60	0.74
Non-Cytoplasmic	61	69	0.52
Transmembrane Helix	70	88	0.57
Cytoplasmic	89	101	0.74
Transmembrane Helix	102	124	0.92
Non-Cytoplasmic	125	131	0.76
Transmembrane Helix	132	153	0.75
Cytoplasmic	154	171	0.66
Transmembrane Helix	172	192	0.72
Non-Cytoplasmic	193	202	0.87
Transmembrane Helix	203	226	0.89
Cytoplasmic	227	243	0.94
Transmembrane Helix	244	264	0.91
Non-Cytoplasmic	265	323	0.54
Transmembrane Helix	324	344	0.87
Cytoplasmic	345	361	0.81
Transmembrane Helix	362	380	0.93
Non-Cytoplasmic	381	412	0.80
Transmembrane Helix	413	437	0.62
Cytoplasmic	438	808	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSQLEVTK AHVAYSCVGI FSSIFSLVSL FVKEQLYIGE SMVASIFGLI VGPHCLNWFN  60
   61 PLSWGNTDSI TLEISRILLC LQVFAVSVEL PRKYMLKHWV SVTMLLVPVM TSGWLVIALF 120
  121 VWILVPGLNF PASLLMGACI TATDPVLAQS VVSGTFAQKV PGHLRNLLSC ESGCNDGLAI 180
  181 PFVFLSLDLL LYPGRGGQIV KDWICVTILW ECIFGSILGC IIGYCGRKAI RFAEGRHIID 240
  241 RESFLAFYLI LALTCAGFGS MLGVDDLLVS FFAGTAFAWD GWFAAKTHES NVSNVIDVLL 300
  301 NYAYFVYLGS ILPWKDFNNP DIGLDVWRLI LLSLVVIFLR RIPAVLSLKP LIPDIKSWRE 360
  361 AMFIGHFGPI GVGAVFAAIT SKSQLESHLT NEETPLKDTP GRGSKHWQVM ACIWPITCFS 420
  421 IMTSVIVHGS SVAVIMLGRY LSTVTLMALP TGRTTNTKNA WLERLPALDK SGRPFSLQRL 480
  481 DKEPSLSPGQ IGGRTSGMVA TPKLGMRQRW RQKLQDNKEI EPDIEMNNFC QGTFQIRKET 540
  541 HASTNDSHGT TTANLGTSNG RAQGLPWRSK MNIIDRAEAV NTIYGLDKLA EDTENKDVWR 600
  601 VNTSRIPGIR SPYDDVYTYQ SDSSSIGSIE RQRIKSLREQ EQQAYIAYTE DDQVIIENRQ 660
  661 GEILEYVKFH KEGLGDAESG LHNHDRPKRA ISPPLEKLHQ ITNEARKNKY YAYKVGNDLV 720
  721 IEDESGEVFR RYRISPHGGK RKIKKIINPV SSVLSSVGIT KPRGVSERIN HYLLHSEDEM 780
  781 ADDEAESEND MDYEDSDGPA SRFKDHAD