YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	N2B_HAEIR
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPKVLVRL VDSQQQILLL SSALCSPQQL SRRFLTPMQA YEQRIESKEL LPDKVQKKTT  60
   61 QELEDLYNTL KNYQPKPVRV ETSSGGGFFG RFMKKEQSAP KIELLNTTAP KGMYIYGSVG 120
  121 GGKTTLMDMF YSCCDDIPKK QRVHFNSFMS KVHGLIHKVK QERGPQDRAF NSEKPLPFDP 180
  181 TLPVAEMIAN ESWLICFDEF QVTDIADAMI LKSLFTHLFN EGIVCIATSN RHPNDLYKNG 240
  241 LQRSNFIPFI GVLLNRCNVA AMDSGVDYRR IAQSGDTNYF VTTQTDAKSQ MERMFKILCS 300
  301 QENDIIRPRT ITHFGRDLTF QRTCGQVLDS NFEELCNRPL GGSDYIQIGQ FFHTVLIHDV 360
  361 PQLTLLLKSQ MRRFITLIDT LYDNRVRVVI SAEVPLDQLF SFTDKPKDLA DEQRMLMDDL 420
  421 KLGDTDTSAS VFTGEEEMFA FDRTISRLYE MQKKEYWEQW AKHR

Type	Start	End	Confidence
Signal Peptide	1	31	0.73
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	464	0.99