YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IMPA1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPWQECMD YAVTLAGQAG EVVREALKNE MNIMVKSSPA DLVTATDQKV EKMLITSIKE  60
   61 KYPSHSFIGE ESVAAGEKSI LTDNPTWIID PIDGTTNFVH GFPFVAVSIG FVVNKKMEFG 120
  121 IVYSCLEDKM YTGRKGKGAF CNGQKLQVSH QEDITKSLLV TELGSSRTPE TVRIILSNIE 180
  181 RLLCLPIHGI RGVGTAALNM CLVAAGAADA YYEMGIHCWD VAGAGIIVTE AGGVLLDVTG 240
  241 GPFDLMSRRV IASSNKTLAE RIAKEIQIIP LQRDDED

Type	Start	End	Confidence
Cytoplasmic	1	186	0.69
Transmembrane Helix	187	208	0.66
Non-Cytoplasmic	209	220	0.78
Transmembrane Helix	221	241	0.65
Cytoplasmic	242	277	0.67