YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MURG_SHEVD
Protein type:	Transmembrane
Type Confidence:	0.47
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNISAEKRI LIMAGGTGGH VFPALAVAKY LSQKSWKVRW LGTAERMEAR LVPQHGFDID  60
   61 FIDIKGVRGN GLLRKLAAPF KVMRSVMQAR RVIQEFKPDV VLGMGGFASG PGGIAARLSG 120
  121 IPLVLHEQNA IPGMTNKLLS RIASKVLCAF EDTFDNIPAQ VVGNPIRKEL IALGQSTETD 180
  181 CVEDALKVLV VGGSLGAKVF NDLMPGVTDA VSKTHSITVW HQVGKGNLAS VKGDYQHLGQ 240
  241 DGSVIVAEFI DDMEAAYSWA DVVLCRAGAL TVSELAAVGL PSILVPYPHA VDDHQTKNAQ 300
  301 VLVNAGGAFL LPQTILDADK LISKLQILAS DRAELCHMGE RAKDVAIIDA TEKVADVCIE 360
  361 LAQKD

Type	Start	End	Confidence
Cytoplasmic	1	9	0.37
Transmembrane Helix	10	27	0.41
Non-Cytoplasmic	28	365	0.93