YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7447869
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSTNFDDV YPVQWRDDQV ILIDQTRLPL EYKEVAIADY EAMGHAIKSM VVRGAPAIGV  60
   61 AAAYGMYLGA RRIQTTELRE FVVQLEFVAD QLRQTRPTAV NLFWAIDQML NVAYHSGENV 120
  121 EQIKANLLSQ AQQIQLDDLR TCQAIGAAGL EVLPREPHQL TILTHCNAGA LATAGYGTAI 180
  181 GVIRAAWSAG RLARVYADET RPRLQGAKLT VWECVQAGIP VTLITDNMAA HCMQQQRIDA 240
  241 VVVGADRIAR NGDIANKIGT YGLAVLAKMH AIPFFVAAPL STVDFALDDG SQIPIEERDP 300
  301 VEIYQPEGNR ITPEGAEFYN PAFDVTPASL ITAIITEQGA IAPEKLADLQ A

Type	Start	End	Confidence
Cytoplasmic	1	49	0.57
Transmembrane Helix	50	70	0.54
Non-Cytoplasmic	71	351	0.86