YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mthl12-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	215	0.99
Transmembrane Helix	216	236	0.95
Cytoplasmic	237	243	0.87
Transmembrane Helix	244	263	0.95
Non-Cytoplasmic	264	282	0.87
Transmembrane Helix	283	304	0.84
Cytoplasmic	305	315	0.88
Transmembrane Helix	316	336	0.93
Non-Cytoplasmic	337	373	0.93
Transmembrane Helix	374	395	0.95
Cytoplasmic	396	417	0.92
Transmembrane Helix	418	438	0.81
Non-Cytoplasmic	439	458	0.77
Transmembrane Helix	459	477	0.94
Cytoplasmic	478	488	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLWLKCFCT LIIVTIAKNS SAKIPHCKYD ETINISHFKR LNDAYIYEHF EIPANLTGEF  60
   61 DYKELMDGSK VPTEFPNLRG CICKVRPCIR ICCARKNILS NGECSDGVKN EIKLTMLDLT 120
  121 MQDILLTDPT LAELNMIPQY NSTELLILRE QFQPCDEIVS LKRDEYTILK DGSILLHTSA 180
  181 EILSNDQYCL YPEIYSDFPE TIRIINRRCY RNVMPGIAQL SVISVVGFIL TLAVYLSVEK 240
  241 LRNLLGKCLI CSLFSMFMEY FIWTMDYFRL LQSICSAAGY MKYFFSMSSY LWFSVVSFHL 300
  301 WELFTSLNRH EPQYRFLIYN TFVWCTAAIP TVVIFSMNQM WENDPGKSEW LPLVGYFGCS 360
  361 VKDWNSSSWF YSHIPIVILN SFNVIMFVLT AIYIWKVKKG VKSFAQHDER NTTCLEFNVQ 420
  421 TYIQFVRLFL IMGASWLLDQ LTRLAEDSHL LLDTIVLNLT VYLNAAFGIL IFVLLILKGS 480
  481 TFKMIMER