YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO4222
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.96
Cytoplasmic	42	70	0.95
Transmembrane Helix	71	90	0.92
Non-Cytoplasmic	91	96	0.77
Transmembrane Helix	97	114	0.96
Cytoplasmic	115	133	0.84
Transmembrane Helix	134	153	0.94
Non-Cytoplasmic	154	171	0.86
Transmembrane Helix	172	191	0.91
Cytoplasmic	192	199	0.77
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	234	0.83
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	262	0.85
Transmembrane Helix	263	283	0.92
Non-Cytoplasmic	284	288	0.78
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	338	0.91
Transmembrane Helix	339	357	0.96
Non-Cytoplasmic	358	360	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVYLAEYLT RFHTGFNVFS YVTFRAILGL LTALMFSLWW GPKLIERLQL MQIGQVVRND  60
   61 GPESHFSKRG TPTMGGLLIL GAIFLSVLLW GDLGSRYVWV MLFVLGSFGM IGFIDDYRKV 120
  121 VRKDTKGLIA RWKYILQSLA ALIIAFFLYT TAANPGETQL VVPFFKDVMP QLGAVFIVLA 180
  181 YFTIVGSSNA VNLTDGLDGL AIMPTVMVAA AFALIAYLSG HAQFANYLHI PHLPGSGELV 240
  241 IVCTAIVGAG LGFLWFNTYP AQVFMGDVGS LSLGAALGAI AVLVRQEILL VIMGGVFVME 300
  301 TVSVILQVGS YKLRGQRIFR MAPIHHHYEL KGWPEPRVIV RFWIISIFLV LLGLATLKLR 360
  361