YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPRD_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSPLHSSWR TGLLLLLLFS VAVRESWQTE EKTCDLVGEK GKESEKELAL LKRLTPLFNK  60
   61 SFESTVGQSP DMYSYVFRVC REAGNHSSGA GLVQINKSNG KETVVGRFNE TQIFNGSNWI 120
  121 MLIYKGGDEY DNHCGREQRR AVVMISCNRH TLADNFNPVS EERGKVQDCF YLFEMDSSLA 180
  181 CSPEISHLSV GSILLVTLAS LVAVYIIGGF LYQRLVVGAK GMEQFPHLAF WQDLGNLVAD 240
  241 GCDFVCRSKP RNVPAAYRGV GDDQLGEESE ERDDHLLPM

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	189	0.98
Transmembrane Helix	190	212	0.82
Cytoplasmic	213	279	0.90