YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPRAB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVVMEQIG RLFINAQQLR QIPRFLESAF PKLPCTVMVS DVPWVFRESH IITGYRPPDQ  60
   61 NWRYYFLTLF QRHNESVNVW THLLASLIIL VKFQELSETV DFLRDPHAQP MFILLLAAFT 120
  121 YLGCSALAHL LSAKSEISHY TFYFLDYVGV AVYQYGSALA HFYYVVEEEW HAQVRTFFLP 180
  181 ASAFLAWLSC TGCCYGKYAS PKLPKFVHKL FQVVPSGLAY CLDISPVLHR IYRCYSSEHW 240
  241 CADQAVVYHC YQVLFFLISA YFFSYPHPER WFPGRCDFIG QGHQIFHVFL VLCTLVQIEA 300
  301 VRLDYTERRR LYEHLHGDLA HDAVALFIFT ACCSALTAFY VRKRVKTYLE EKQE

Type	Start	End	Confidence
Cytoplasmic	1	76	0.84
Transmembrane Helix	77	94	0.61
Non-Cytoplasmic	95	110	0.67
Transmembrane Helix	111	131	0.95
Cytoplasmic	132	141	0.64
Transmembrane Helix	142	164	0.82
Non-Cytoplasmic	165	176	0.72
Transmembrane Helix	177	199	0.87
Cytoplasmic	200	209	0.74
Transmembrane Helix	210	229	0.44
Non-Cytoplasmic	230	244	0.40
Transmembrane Helix	245	265	0.88
Cytoplasmic	266	282	0.41
Transmembrane Helix	283	301	0.66
Non-Cytoplasmic	302	318	0.67
Transmembrane Helix	319	341	0.85
Cytoplasmic	342	354	0.72