YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOTA_TREPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIASFIGLF GGFAIIIFGA VLGGSARGLF HVPSLLITVG GSYLTLFLTY PLSYAVGVFR  60
   61 VIARVFHAAD FHEREIVQRL YALAEKSRRT GLLALEEEIQ DFDDDFVRTG LRNVVDGVDG 120
  121 DAIKALMESE LTHMEDRHNT WISLLNSWAA LAPGYGMLGT VMGLIGMLAT LEDKSSLGSN 180
  181 MATALITTFY GSLVQNWFIT PVATKLQYQH DLEVKSKEMV IEGVLSIQAG DHPRVLAQRL 240
  241 LTYLSPKMRK ELEMELIKD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	29	0.89
Non-Cytoplasmic	30	35	0.65
Transmembrane Helix	36	59	0.78
Cytoplasmic	60	146	0.81
Transmembrane Helix	147	169	0.88
Non-Cytoplasmic	170	180	0.64
Transmembrane Helix	181	199	0.75
Cytoplasmic	200	259	0.74