YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOTA_AGRFC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVIGLIIT FGCIIGGYMA MGGHLNVLVQ PFELMIIGGA GLGGFIMANP MKVVKDSGKA  60
   61 LGEAFKHSVP KERNYLDVLG VLYSLMRDLR TKSRNEIEAH IDNPEESSIF QSAPSVLKNK 120
  121 ELTSFICDYV RLIIIGNARS HEIEALMDEE IETILHDKLK PYHAITTMGD SFPAIGIVAA 180
  181 VLGVIKAMGK INESPEVLGG LIGAALVGTM LGIILSYSIC NPLASQVKIV RTKQHRLYII 240
  241 VKQTLIAYMN GSVPQVALEY GRKTISNYER PSIDAVEQEM MNPGGENKAA

Type	Start	End	Confidence
Cytoplasmic	1	4	0.83
Transmembrane Helix	5	25	0.88
Non-Cytoplasmic	26	31	0.67
Transmembrane Helix	32	51	0.88
Cytoplasmic	52	167	0.96
Transmembrane Helix	168	188	0.86
Non-Cytoplasmic	189	197	0.83
Transmembrane Helix	198	221	0.88
Cytoplasmic	222	290	0.85