YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MNHE1_STAA2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQLVLNFI IAVFWLFVTN SYTTNNFVLG FIFGLVLVYL LHRVLPGRFY VITLYRIIKL  60
   61 VIIFLIELIK ANFDVLKIII KPSIKNEPGF FVYHTDLKKD WQIVLLSNLI TLTPGTVVLG 120
  121 VSDDRTKIYI HAIDFSTKEQ EVESIKTSLE KIVREVGEI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.41
Transmembrane Helix	9	42	0.70
Non-Cytoplasmic	43	51	0.27
Transmembrane Helix	52	71	0.57
Cytoplasmic	72	159	0.63