YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MIP_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELRSASFWRA IFAEFFATLF YVFFGLGSSL RWAPGPLHVL QVALAFGLAL ATLVQTVGHI  60
   61 SGAHVNPAVT FAFLVGSQMS LLRAFCYIAA QLLGAVAGAA VLYSVTPPAV RGNLALNTLH 120
  121 AGVSVGQATT VEIFLTLQFV LCIFATYDER RNGRMGSVAL AVGFSLTLGH LFGMYYTGAG 180
  181 MNPARSFAPA ILTRNFSNHW VYWVGPIIGG GLGSLLYDFL LFPRLKSVSE RLSILKGARP 240
  241 SDSNGQPEGT GEPVELKTQA L

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	30	0.89
Non-Cytoplasmic	31	41	0.67
Transmembrane Helix	42	63	0.83
Cytoplasmic	64	83	0.74
Transmembrane Helix	84	105	0.90
Non-Cytoplasmic	106	124	0.86
Transmembrane Helix	125	147	0.87
Cytoplasmic	148	155	0.89
Transmembrane Helix	156	179	0.87
Non-Cytoplasmic	180	199	0.96
Transmembrane Helix	200	221	0.94
Cytoplasmic	222	261	0.98