YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116054157, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.72
Transmembrane Helix	10	30	0.76
Non-Cytoplasmic	31	339	0.93
Transmembrane Helix	340	359	0.84
Cytoplasmic	360	365	0.75
Transmembrane Helix	366	388	0.89
Non-Cytoplasmic	389	393	0.68
Transmembrane Helix	394	416	0.78
Cytoplasmic	417	437	0.90
Transmembrane Helix	438	459	0.92
Non-Cytoplasmic	460	469	0.79
Transmembrane Helix	470	493	0.87
Cytoplasmic	494	538	0.93
Transmembrane Helix	539	557	0.92
Non-Cytoplasmic	558	871	0.88
Transmembrane Helix	872	891	0.93
Cytoplasmic	892	897	0.70
Transmembrane Helix	898	917	0.92
Non-Cytoplasmic	918	923	0.71
Transmembrane Helix	924	943	0.80
Cytoplasmic	944	972	0.87
Transmembrane Helix	973	993	0.91
Non-Cytoplasmic	994	1003	0.69
Transmembrane Helix	1004	1027	0.86
Cytoplasmic	1028	1046	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFFIDRPI FAWVIALVIM LAGGLSILSL PVNQYPAIAP PAIAVQVSYP GASAETVQDT  60
   61 VVQVIEQQMN GIDNLRYISS ESNSDGSMTI TVTFEQGTDP DIAQVQVQNK LQLATPLLPQ 120
  121 EVQRQGIRVT KAVKNFLMVV GVVSTDGSMT KEDLSNYIVS NIQDPLSRTK GVGDFQVFGS 180
  181 QYSMRIWLDP AKLNSYQLTP GDVSSAIQAQ NVQISSGQLG GLPAVKGQQL NATIIGKTRL 240
  241 QTAEQFENIL LKVNPDGSQV RLKDVADVGL GGQDYSINAQ FNGSPASGIA IKLATGANAL 300
  301 DTAKAIRQTI ANLEPFMPQG MKVVYPYDTT PVVSASIHEV VKTLGEAILL VFLVMYLFLQ 360
  361 NFRATLIPTI AVPVVLLGTF GVLAAFGFSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 420
  421 AEEGLSPREA ARKSMGQIQG ALVGIAMVLS AVFLPMAFFG GSTGVIYRQF SITIVSAMAL 480
  481 SVIVALILTP ALCATMLKPI EKGDHGEHKG GFFGWFNRMF LSTTHGYERG VASILKHRAP 540
  541 YLLIYVVIVA GMIWMFTRIP TAFLPDEDQG VLFAQVQTPP GSSAERTQVV VDSMREYLLE 600
  601 KESSSVSSVF TVTGFNFAGR GQSSGMAFIM LKPWEERPGG ENSVFELAKR AQMHFFSFKD 660
  661 AMVFAFAPPS VLELGNATGF DLFLQDQAGV GHEVLLQARN KFLMLAAQNP ALQRVRPNGM 720
  721 SDEPQYKLEI DDEKASALGV SLADINSTVS IAWGSSYVND FIDRGRVKRV YLQGRPDARM 780
  781 NPDDLSKWYV RNDKGEMVPF NAFATGKWEY GSPKLERYNG VPAMEILGEP APGLSSGDAM 840
  841 AAVEEIVKQL PKGVGYSWTG LSYEERLSGS QAPALYALSL LVVFLCLAAL YESWSIPFSV 900
  901 MLVVPLGVIG ALLATSMRGL SNDVFFQVGL LTTIGLSAKN AILIVEFAKE LHEQGKGIVE 960
  961 AAIEACRMRL RPIVMTSLAF ILGVVPLAIS TGAGSGSQHA IGTGVIGGMV TATVLAIFWV1020
 1021 PLFYVAVSTL FKDEASKQQA SVEKGQ