YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264917, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METMPNWLKQ RAFLTPDRTA IEIEEEKVTF MQLHEKVVSV CEHLTHVGVN RGQKVAVLMK  60
   61 NGMEMITVIH ALSYVGAVAV LLNTRLSREE LLWQMDDAEV ICLVTDQDFE AKDIPVYSFA 120
  121 EVMNGPKEEA SIQEEFSLRE AMTIIYTSGT TGKPKGVILT YGNHWASAVG SSLNLGLRDD 180
  181 DCWLACMPMF HVGGLSLLMK NIMYGMRILL VPKYDADFIH KALQTRGVTI ISVVSKMLTD 240
  241 LLERLGEGTY PSSFRCMLLG GGPAPKPLLE TCVDKGIPVY QTYGMTETSS QICTLSADYM 300
  301 LTKVGSAGKP LFQCQLRIEK DGVVVPPFAE GEIVVKGPNV TGGYFNREDA TRETIQNGWL 360
  361 HTGDLGYLDE EGFLYVLDRR SDLIISGGEN IYPAQIEEVL LSHPMVAEAG VVGMTDDKWG 420
  421 QVPAAFVVKS GEITEEEILH FCEEKLAKYK VPKKACFLEE LPRNASKKLL RRELRQLVEE 480
  481 M

Type	Start	End	Confidence
Cytoplasmic	1	65	0.52
Transmembrane Helix	66	82	0.54
Non-Cytoplasmic	83	481	0.95