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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MEC4_CAEBR
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWMQNLKNY QHLRDPSEYM SQVYGDPLAY LQENTKFVTE REYYEDFGYG ECFNSSESEV  60
   61 QCELITGEFD PKLLPYDKRL AWHFKEFCYK TSAHGIPMIG EAPNVYYRAV WVMLFLGCMI 120
  121 MLYLNAQSVL DKYNRNEKIV DIQLKFDTAP FPAITLCNLN PYKASLATSV DLVKRTLSAF 180
  181 DGAMGKAGGN KEHDGEKEVI TEAPTTPAPT TKPSRRRGKR DLSGAFFEPG FARCLCGSQG 240
  241 SSEQEDKDDE KEEEMHETTT RKPFNINDAD EEWDGMEEYD NNEHYENYDV EATTGMNMME 300
  301 ECQSERTKFD EPTGFDDRCI CAFDRSTHDA WPCFLNGTWE TTECDTCNEH AFCTKDNKTA 360
  361 KGHRSPCICA PSKFCVAYNG KTPPIEIWTY LQGGTPTEDP NFLEAMGFQG MTDEVAIVTK 420
  421 AKENIMFAMA TLSMQDRERL STTKRELVHK CSFNGKACDI EADFLTHIDP VFGSCFTFNH 480
  481 NRTVNLTSIR AGPMYGLRML VYVNASDYMP TTEATGVRLT IHDKEDFPFP DTFGYSAPTG 540
  541 YVSSFGLRLR KMSRLPAPYG DCVPDGKTSD YIYSNYEYSV EGCYRSCFQQ LVLKECRCGD 600
  601 PRFPVPEGAR HCDAADPVAR RCLDARMNDL GGLHGSFRCR CQQPCGQSIY SVTYSPAKWP 660
  661 SLSLQIQLGS CNGTAVECNK HYKENGAMVE VFYEQLNFEM LTESEAYGFV NLLADFGGQL 720
  721 GLWCGISFLT CCEFVFLFLE TAYMSAEHNY SLYKKKKAEK AKKVASGSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle