YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDH_GEOSL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKKIALIG GGQIGGVLAQ LCALRELGDV VLFDIVEGLP QGKCLDIAEA SPVDGFDVCL  60
   61 KGTNSYEDIA GADVVIVTAG LPRKPGMSRD DLIEVNSKIM TSVAEGIKQY APNSFVIVIS 120
  121 NPLDAMVTLC QKVTGFPYNR VIGQAGVLDS ARFATFIAWE LGVSVKDVTA MTLGGHGDDM 180
  181 VPLVRYASVK GIPVMELLER KYGSKEKAKE VMDAMVNRTR LAGGEVVALL KTGSAFYSPA 240
  241 SSAIAMAESI LKDQKRVLPT CAYLQGEFGV NGYYVGVPCV LGEKGIENII EFSLDAEEQA 300
  301 MMDKSVAAVK SLVDSLK

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	317	0.99