YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MDGA2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVYGLVWL LTVLLEGISG QGVYAPPTVR IVHSGLACNI EEERYSERVY TIREGETLEL  60
   61 TCLVTGHPRP QIRWTKTAGS ASDRFQDSSV FNETLRITSI QRHQGGRYYC KAENGLGSPA 120
  121 IKSIRVDVYY LDDPVVTVHQ SIGEAKEQFY YERTVFLRCV ANSNPPVRYS WRRGQEVLLQ 180
  181 GSDKGVEIYE PFFTQGETKI LKLKNLRPQD YANYSCIASV RNVCNIPDKM VSFRLSNKTA 240
  241 SPSIKLLVDD PIVVNPGEAI TLVCVTTGGE PMPSLTWVRS FGTLPEKIVL NGGTLTIPAI 300
  301 TSDDAGTYSC IANNNVGNPA KKSTNIIVRA LKKGRFWITP DPYHKDDNIQ IGREVKISCQ 360
  361 VEAVPSEELT FSWFKNGRPL RSSERMVITQ TDPDVSPGTT NLDIIDLKFT DFGTYTCVAS 420
  421 LKGGGISDIS IDVNISSSTV PPNLTVPQEK SPLVTREGDT IELQCQVTGK PKPIILWSRA 480
  481 DKEVAMPDGT MQMESYDGTL RIVNVSREMS GMYRCQTSQY NGFNVKPREA LVQLIVQYPP 540
  541 AVEPAFLEIR QGQDRSVTMS CRVLRAYPIR VLTYEWRLGN KLLRTGQFDS QEYTEYPLKS 600
  601 LSNENYGVYN CSIINEAGAG RCSFLVTGKA YAPEFYYDTY NPVWQNRHRV YSYSLQWTQM 660
  661 NPDAVDRIVA YRLGIRQAGQ QRWWEQEIKI NGNIQKGELI TYNLTELIKP EAYEVRLTPL 720
  721 TKFGEGDSTI RVIKYTGEFH CGFEDGNICL FTQDDTDNFD WTKQSTATRN TKYTPNTGPN 780
  781 ADRSGSKEGF YMYIETSRPR LEGEKARLLS PVFSIAPKNP YGPTNSAYCF SFFYHMYGQH 840
  841 IGVLNVYLRL KGQTTIENPL WSSSGNKGQR WNEAHVNIYP ITSFQLIFEG IRGPGIEGDI 900
  901 AIDDVSIAEG ECAKQDLPTK NSVDGAVGIL VHIWLFPVII LISILSPRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle