YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCHR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QATCTGCMDL QTSLLSTGPN ASNISDGQDN LTLPGSPPRT GSVSYINIIM PSVFGTICLL  60
   61 GIVGNSTVIF AVVKKSKLHW CSNVPDIFII NLSVVDLLFL LGMPFMIHQL MGNGVWHFGE 120
  121 TMCTLITAMD ANSQFTSTYI LTAMTIDRYL ATVHPISSTK FRKPSMATLV ICLLWALSFI 180
  181 SITPVWLYAR LIPFPGGAVG CGIRLPNPDT DLYWFTLYQF FLAFALPFVV ITAAYVKILQ 240
  241 RMTSSVAPAS QRSIRLRTKR VTRTAIAICL VFFVCWAPYY VLQLTQLSIS RPTLTFVYLY 300
  301 NAAISLGYAN SCLNPFVYIV LCETFRKRLV LSVKPAAQGQ LRTVSNAQTA DEERTESKGT 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.83
Transmembrane Helix	48	73	0.83
Cytoplasmic	74	86	0.79
Transmembrane Helix	87	108	0.91
Non-Cytoplasmic	109	130	0.66
Transmembrane Helix	131	151	0.63
Cytoplasmic	152	166	0.86
Transmembrane Helix	167	188	0.93
Non-Cytoplasmic	189	216	0.93
Transmembrane Helix	217	239	0.91
Cytoplasmic	240	259	0.98
Transmembrane Helix	260	282	0.92
Non-Cytoplasmic	283	298	0.92
Transmembrane Helix	299	322	0.72
Cytoplasmic	323	360	0.81