YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MC5R_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSTLTVL NLTLNASEDG ILGSNVKNKS LACEEMGIAV EVFLTLGLVS LLENILVIGA  60
   61 IVKNKNLHSP MYFFVGSLAV ADMLVSMSNA WETVTIYLLN NKHLVIADTF VRHIDNVFDS 120
  121 MICISVVASM CSLLAIAVDR YITIFYALRY HHIMTARRSG VIIACIWTFC ISCGIVFIIY 180
  181 YESKYVIICL ISMFFTMLFF MVSLYIHMFL LARNHVKRIA ASPRYNSVRQ RTSMKGAITL 240
  241 TMLLGIFIVC WSPFFLHLIL MISCPQNVYC SCFMSYFNMY LILIMCNSVI DPLIYALRSQ 300
  301 EMRRTFKEIV CCHGFRRPCR LLGGY

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.57
Transmembrane Helix	40	62	0.60
Cytoplasmic	63	70	0.76
Transmembrane Helix	71	91	0.83
Non-Cytoplasmic	92	119	0.90
Transmembrane Helix	120	138	0.94
Cytoplasmic	139	158	0.83
Transmembrane Helix	159	180	0.95
Non-Cytoplasmic	181	186	0.83
Transmembrane Helix	187	211	0.90
Cytoplasmic	212	236	0.92
Transmembrane Helix	237	259	0.90
Non-Cytoplasmic	260	275	0.87
Transmembrane Helix	276	297	0.90
Cytoplasmic	298	325	0.98