YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229130513, gi...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKILFWIL GIIGILIIGG GAYAYSIYSS VSKTLDEVHK PLKRDKDSKG TEEVKISKSE  60
   61 PVSILLLGVD ERGNEKGRSD SLILITLNPK NNSMKTVSIP RDTYTEIVGK GKSDKINHAY 120
  121 AFGGVDMSVA TVEKFLNVPI NYYIEVNMAG FKDIVDAVGG VDVNNDLEFK QDKHHFAKGN 180
  181 IHLTGDEALS FTRMRYEDPR GDFGRQMRQR QVMQAVIKKG ATFSSLTSYG DVLTAIQKNV 240
  241 KTNLTQDQMF DMQKNYKNCL ENSEDIQIPG DGHKAADGIW YYYVPEAAKQ DLTNKLRAHL 300
  301 EVTK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.56
Transmembrane Helix	6	25	0.58
Non-Cytoplasmic	26	304	0.99