YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259967, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKILFWVL GILGVLIIGG GIYAYNVYSS VSNTLKEVHQ PLKRDQNNSN VGEKVSKSEP  60
   61 VSILLLGADE RGEDKGRSDS LMVITLNPKN NSMKTVSIPR DTYTEIVGKG KSDKINHAYA 120
  121 FGGVDMSVAT VENFLNVPIN YYIEVNMEGF KDIVDAVGGV DVKNDLEFTQ DGHHFAKGNI 180
  181 HLTGDQALAF TRMRKQDPRG DFGRQMRQRQ VMQGVIKKGA SFSSLTGYGD VLSAIQKNVK 240
  241 TNLTQDQMFD MQKNYKDCLK NSEDIQIPGD GHKAADGIWY YYVPDAAKQD LTNKLRTHLE 300
  301 VTK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.50
Transmembrane Helix	6	25	0.52
Non-Cytoplasmic	26	303	0.99