YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CERS4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSLSEWLW QETYWLPPNV TWAELEDRDG LVFAHPHHVL AAFPVALVLV AVRIVFERFV  60
   61 ALPLSRWMGV QDPIRRKIKP NPVLEKYFLR MKQCPEETQM VLLASQCGLT LRQTQRWFRR 120
  121 RRNQDRPSLS KKFCEACWRF VFYLCSFVGG TSILYHESWL WSPSLCWENY PHQTLNLSLY 180
  181 WWYLLELGFY LSLLITLPFD VKRKDFKEQV VHHFVAVGLI GFSYSVNLLR IGAVVLLLHD 240
  241 CSDYLLEGCK ILNYAHFRRG CDALFIMFAL VFFYTRLIFF PTQVIYTSVY DSIKNSGPFF 300
  301 GYYFFIVLLV MLQILHVYWF CLILRMLYSF LHKGQMTEDI RSDVEEPDSS DDEPVSEGPQ 360
  361 LKNGMARGSR VAVTNGPRSR AAACLTNGHT RAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.88
Transmembrane Helix	37	56	0.87
Cytoplasmic	57	135	0.96
Transmembrane Helix	136	156	0.91
Non-Cytoplasmic	157	178	0.90
Transmembrane Helix	179	199	0.93
Cytoplasmic	200	259	0.64
Transmembrane Helix	260	280	0.84
Non-Cytoplasmic	281	298	0.63
Transmembrane Helix	299	323	0.87
Cytoplasmic	324	393	0.71