YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_YERPP
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPICSTGL RWLWLAVVVV ILDISSKQWV MAHFALYESV PLIPFFNLTY AQNFGAAFSF  60
   61 LADKSGWQRW FFAGIAIGIS VVLMVMMYRS TAKQRLINCA YALIIGGALG NLYDRLVHGA 120
  121 VNDFLDFYIN NWHFPTFNLA DVAICIGAAL VIFEGFLSPV EKNAVNNDE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	31	0.82
Non-Cytoplasmic	32	68	0.80
Transmembrane Helix	69	88	0.95
Cytoplasmic	89	96	0.81
Transmembrane Helix	97	117	0.87
Non-Cytoplasmic	118	136	0.84
Transmembrane Helix	137	157	0.89
Cytoplasmic	158	169	0.91